Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7016084 chr8:121503583 A/G 4.11E-6 178 27.23 25 19.87 KM Plot
PCPG rs7016677 chr8:126223096 A/C 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs704464 chr3:80675741 A/G 0.000161 178 27.27 23.48 19.87 KM Plot
PCPG rs7044931 chr9:36111917 T/C 0 178 25.47 24.5 2.93 KM Plot
PCPG rs7045963 chr9:136927728 G/A 5.12E-7 176 25.6 21.55 31.47 KM Plot
PCPG rs7074999 chr10:50602997 G/A 4.15E-6 177 24.52 33.13 25.17 KM Plot
PCPG rs7078860 chr10:131965392 A/G 0 178 25.53 24.47 3.17 KM Plot
PCPG rs7082126 chr10:131967508 C/T 0 178 25.4 25.33 3.17 KM Plot
PCPG rs70937251 chr2:114686707 GT/G 0.000292 171 25.53 23.43 3.17 KM Plot
PCPG rs70961718 chr2:241525858 C/G 7.15E-12 178 25.77 24.62 6.73 KM Plot
PCPG rs7096626 chr10:101490870 G/A 9.93E-5 177 17.88 29.62 23.43 KM Plot
PCPG rs71020572 chr7:1111186 AGGAGAGGGAGGAAAGG/GGGAGAGGGAGGAAAGG 0.000233 176 25.87 24.5 49.58 KM Plot
PCPG rs71043062 chr2:229300723 CT/C 0 177 25.67 24.23 3.17 KM Plot
PCPG rs71084466 chr13:37647771 C/CGT 0.000355 176 4.17 19.1 25.97 KM Plot
PCPG rs71115945 chr14:74499919 AT/A 0.000293 177 25.4 28.3 10.3 KM Plot